Working with Ozone File System

Note

ODP currently does not support Ozone2 as the default file system. Yet ODP Ozone2 is configured to work independently of HDFS.

Prerequisites

To enable ofs support with applications, configure applications to use necessary jars and ozone2-site.xml.

  • Add the ozone-filesystem-hadoop3.jar to the application classpath.

# hadoop-env export HADOOP_CLASSPATH=$HADOOP_CLASSPATH:/usr/odp/current/ozone2-client/share/ozone/lib/ozone-filesystem-hadoop3-*.jar
  • Add the following configs to core-site.xml

<property> <name>fs.ofs.impl</name <value>org.apache.hadoop.fs.ozone.RootedOzoneFileSystem</value> </property>
  • Add following configs from ozone2-site.xml to hdfs-site.xml on Ambari.



ozone.om.service.ids

omservice

ozone.om.address.omservice.om0

<om-node1-host>:9862

ozone.om.address.omservice.om1

<om-node2-host>:9862

ozone.om.address.omservice.om2

<om-node3-host>:9862

ozone.om.nodes.omservice

om0,om1,om2

ozone.om.kerberos.keytab.file

/etc/security/keytabs/ozone.om.service.keytab

ozone.om.kerberos.principal

om/_HOST@ADSRE.COM

  • Restart hadoop services

HDFS with OFS

Access hdfs dfs operations with ozone2 storage :

$ hdfs dfs [options] OFS_URI

Here are some examples :

  • List files

$ hdfs dfs -ls ofs://omservice/ SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/odp/3.2.2.0-1/hadoop/lib/slf4j-reload4j-1.7.35.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/odp/3.2.2.0-1/hadoop-hdfs/lib/slf4j-reload4j-1.7.35.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [org.slf4j.impl.Reload4jLoggerFactory] 24/03/20 16:15:08 INFO client.ClientTrustManager: Loading certificates for client. Found 2 items drwxrwxrwx - hdfs hadoop 0 2024-03-20 17:58 ofs://omservice/s3v drwxrwxrwx - hdfs hadoop 0 2024-03-20 18:37 ofs://omservice/testvol
  • Create directory

$ hdfs dfs -mkdir ofs://omservice/testvol/testbucket SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/odp/3.3.0.0-1/hadoop/lib/slf4j-reload4j-1.7.35.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/odp/3.3.0.0-1/hadoop-hdfs/lib/slf4j-reload4j-1.7.35.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/odp/3.3.0.0-1/tez/lib/slf4j-reload4j-1.7.35.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [org.slf4j.impl.Reload4jLoggerFactory] 24/05/02 13:18:57 INFO client.ClientTrustManager: Loading certificates for client. 24/05/02 13:18:58 INFO rpc.RpcClient: Creating Bucket: testvol/testbucket, with bucket layout FILE_SYSTEM_OPTIMIZED, ambari-qa as owner, Versioning false, Storage Type set to DISK and Encryption set to false, Replication Type set to server-side default replication type, Namespace Quota set to -1, Space Quota set to -1
  • Upload file

$ vi /tmp/README.md hi, this is README.md $ hdfs dfs -put /tmp/README.md ofs://omservice/testvol/testbucket/ $ hdfs dfs -ls ofs://omservice/testvol/testbucket/ Found 1 items -rw-rw-rw- 3 ambari-qa ambari-qa 22 2024-04-30 13:31 ofs://omservice/testvol/testbucket/README.md
  • Reading file

$ hdfs dfs -cat ofs://omservice/testvol/testbucket/README.md 24/05/02 13:37:40 INFO client.ClientTrustManager: Loading certificates for client. 24/05/02 13:37:40 INFO impl.MetricsConfig: Loaded properties from hadoop-metrics2.properties 24/05/02 13:37:40 INFO impl.MetricsSystemImpl: Scheduled Metric snapshot period at 10 second(s). 24/05/02 13:37:40 INFO impl.MetricsSystemImpl: XceiverClientMetrics metrics system started hi, this is README.md
Note

retry.RetryInvocationHandler: com.google.protobuf.ServiceException: INFO logs may be ignored as client hits all OM hosts one by one to identify leader OM.

24/05/02 13:37:40 INFO retry.RetryInvocationHandler: com.google.protobuf.ServiceException: org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.ozone.om.exceptions.OMNotLeaderException): OM:om1 is not the leader. Suggested leader is OM:om2[odp03.acceldata.dvl]. at org.apache.hadoop.ozone.protocolPB.OzoneManagerProtocolServerSideTranslatorPB.createNotLeaderException(OzoneManagerProtocolServerSideTranslatorPB.java:292) at org.apache.hadoop.ozone.protocolPB.OzoneManagerProtocolServerSideTranslatorPB.createLeaderErrorException(OzoneManagerProtocolServerSideTranslatorPB.java:274) at org.apache.hadoop.ozone.protocolPB.OzoneManagerProtocolServerSideTranslatorPB.submitReadRequestToOM(OzoneManagerProtocolServerSideTranslatorPB.java:267) at org.apache.hadoop.ozone.protocolPB.OzoneManagerProtocolServerSideTranslatorPB.internalProcessRequest(OzoneManagerProtocolServerSideTranslatorPB.java:211) at org.apache.hadoop.ozone.protocolPB.OzoneManagerProtocolServerSideTranslatorPB.processRequest(OzoneManagerProtocolServerSideTranslatorPB.java:171) at org.apache.hadoop.hdds.server.OzoneProtocolMessageDispatcher.processRequest(OzoneProtocolMessageDispatcher.java:89) at org.apache.hadoop.ozone.protocolPB.OzoneManagerProtocolServerSideTranslatorPB.submitRequest(OzoneManagerProtocolServerSideTranslatorPB.java:162) at org.apache.hadoop.ozone.protocol.proto.OzoneManagerProtocolProtos$OzoneManagerService$2.callBlockingMethod(OzoneManagerProtocolProtos.java) at org.apache.hadoop.ipc.ProtobufRpcEngine$Server.processCall(ProtobufRpcEngine.java:484) at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:595) at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573) at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227) at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1094) at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1017) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:422) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1899) at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3048) , while invoking $Proxy11.submitRequest over nodeId=om1,nodeAddress=odp02.acceldata.dvl:9862 after 1 failover attempts. Trying to failover immediately.

YARN with Ozone2

Yarn can be used to run jobs with jobs accessing data from or writing into ozone file system.

  • Add ozone-filesystem-hadoop3-1.4.0_.jar to _mapreduce.application.classpath* in mapred-site.xml .

  • If ranger authorization is enabled, provide necessary permissions to ofs buckets, hdfs path, yarn queues, to perform necessary operations as per job requirements.

  • Perform respective user kerberos authentication in case of secure cluster.

  • submit job

Here is a sample job, doing wordcount on data from file in ofs, and storing the output file with wordcount result in ofs.

# yarn jar /path/to/jar /path/to/inputfile /ath/to/output $ yarn --config /etc/hadoop/conf jar /usr/odp/3.3.6.2-104/hadoop-mapreduce/hadoop-mapreduce-examples.jar wordcount ofs://omservice/testvol/testbucket/hdfsOzone.txt ofs://omservice/testvol/testbucket/wordcount_output $ hdfs dfs -cat ofs://omservice/testvol/testbucket/wordcount_output/part-r-00000 24/05/03 11:06:36 INFO client.ClientTrustManager: Loading certificates for client. 24/05/03 11:06:37 INFO impl.MetricsConfig: Loaded properties from hadoop-metrics2.properties 24/05/03 11:06:37 INFO impl.MetricsSystemImpl: Scheduled Metric snapshot period at 10 second(s). 24/05/03 11:06:37 INFO impl.MetricsSystemImpl: XceiverClientMetrics metrics system started HDFS. 1 Hello 2 Ozone. 1 from 1
Warning

Job failing with : INFO mapreduce.Job: Task Id : task-id , Status : FAILEDError: java.io.IOException: Cannot resolve OM host omservice in the URI``

Configure mapreduce job to use ozone-site.xml. Alternatively, you can pass configs during runtime:

yarn jar /usr/odp/3.3.0.0-1/hadoop-mapreduce/hadoop-mapreduce-examples.jar wordcount -Dozone.om.service.ids=omservice -Dozone.om.nodes.omservice=om0,om1,om2 -Dozone.om.address.omservice.om0=odp01.acceldata.dvl:9862 -Dozone.om.address.omservice.om1=odp02.acceldata.dvl:9862 -Dozone.om.address.omservice.om2=odp03.acceldata.dvl:9862 ofs://omservice/testvol/testbucket/hdfsOzone.txt ofs://omservice/testvol/testbucket/wordcount_output10

HIVE with Ozone

Although HIVE installation and operations use HDFS as default file system, ozone can be configured to be parallel file system for HIVE operations.

Configure Hive to work with Ozone :

  • Navigate to the Ambari UI > Hive > Configs > Advanced Hive-env and add

export HIVE_AUX_JARS_PATH=${HIVE_AUX_JARS_PATH}:/usr/odp/current/ozone2-client/share/ozone/lib/ozone-filesystem-hadoop3-2.1.0.3.3.6.2-104.jar
  • Restart Hive and Tez.

  • If Ranger authorization is enabled, grant the necessary permissions to OFS (Ozone File System) buckets, HDFS paths, and Hive URL to allow the required operations as per the job requirements.

  • Authenticate users with Kerberos credentials when operating in a secure cluster.

If queries are failing with below error when run queries as end user is enabled in hive org.apache.hadoop.security.authorize.AuthorizationException: User: hive is not allowed to impersonate ... https://issues.apache.org/jira/browse/HDDS-664

Ambari UI > Ozone > Configurations > Custom Core-site: add the following configs and restart services :



hadoop.proxyuser.hive.groups


hadoop.proxyuser.hive.hosts


hadoop.proxyuser.hive.users


Store tables in OFS

To create tables in OFS add LOCATION '<OFS_URI> to CREATE TABLE command. This will make Hive tables reside at the specified location in ozone. All data changes her after will be in effect at table in given OFS_URI.

Here are sample hive operations with Hive accessing OFS :

  • Connect to Beeline

  • Create new table in ofs

0: jdbc:hive2://odp01.ha.ubuntu.ce:2181,odp02> CREATE EXTERNAL TABLE IF NOT EXISTS `employee`( . . . . . . . . . . . . . . . . . . . . . . .> `id` bigint, . . . . . . . . . . . . . . . . . . . . . . .> `name` string, . . . . . . . . . . . . . . . . . . . . . . .> `age` smallint) . . . . . . . . . . . . . . . . . . . . . . .> STORED AS parquet . . . . . . . . . . . . . . . . . . . . . . .> LOCATION 'ofs://omservice/testvol/user/employee'; INFO : Compiling command(queryId=hive_20240313142803_8810af7b-f2f3-401f-ba40-5559e446d18e): CREATE EXTERNAL TABLE IF NOT EXISTS `employee`( `id` bigint, `name` string, `age` smallint) STORED AS parquet LOCATION 'ofs://omservice/testvol/user/employee' INFO : Semantic Analysis Completed (retrial = false) INFO : Created Hive schema: Schema(fieldSchemas:null, properties:null) INFO : Completed compiling command(queryId=hive_20240313142803_8810af7b-f2f3-401f-ba40-5559e446d18e); Time taken: 5.791 seconds INFO : Operation CREATETABLE obtained 1 locks INFO : Executing command(queryId=hive_20240313142803_8810af7b-f2f3-401f-ba40-5559e446d18e): CREATE EXTERNAL TABLE IF NOT EXISTS `employee`( `id` bigint, `name` string, `age` smallint) STORED AS parquet LOCATION 'ofs://omservice/testvol/user/employee' INFO : Starting task [Stage-0:DDL] in serial mode INFO : Completed executing command(queryId=hive_20240313142803_8810af7b-f2f3-401f-ba40-5559e446d18e); Time taken: 2.497 seconds No rows affected (8.958 seconds)
  • Validate new table

0: jdbc:hive2://odp01.ha.ubuntu.ce:2181,odp02> show tables; INFO : Compiling command(queryId=hive_20240313143033_f33adeb6-bf59-45ac-bfb4-4e654c063ec1): show tables INFO : Semantic Analysis Completed (retrial = false) INFO : Created Hive schema: Schema(fieldSchemas:[FieldSchema(name:tab_name, type:string, comment:from deserializer)], properties:null) INFO : Completed compiling command(queryId=hive_20240313143033_f33adeb6-bf59-45ac-bfb4-4e654c063ec1); Time taken: 0.269 seconds INFO : Executing command(queryId=hive_20240313143033_f33adeb6-bf59-45ac-bfb4-4e654c063ec1): show tables INFO : Starting task [Stage-0:DDL] in serial mode INFO : Completed executing command(queryId=hive_20240313143033_f33adeb6-bf59-45ac-bfb4-4e654c063ec1); Time taken: 0.281 seconds +-----------+ | tab_name | +-----------+ | employee | +-----------+
  • Add values to table

0: jdbc:hive2://odp01.ha.ubuntu.ce:2181,odp02> INSERT INTO employee(id, name, age) VALUES (1, "dora", 34) ;
  • Validate newly added values

0: jdbc:hive2://odp01.ha.ubuntu.ce:2181,odp02> select * from employee; +--------------+----------------+---------------+ | employee.id | employee.name | employee.age | +--------------+----------------+---------------+ | 1 | dora | 34 | +--------------+----------------+---------------+ 1 row selected (6.1 seconds)

SPARK with Ozone2

Note

Although Ozone2 can work independently, current Ambari does not support Spark installation without HDFS.

Apache Spark can access data from Apache Ozone2 and perform tasks. To access Apache Ozone2, configure spark :

  • Configure spark shell to use /usr/odp/current/ozone2-client/share/ozone/lib/ozone-filesystem-hadoop3-client-2.1.0.3.3.6.2-104.jar.

Accessing Apache Ozone data in Apache Spark3

  • Creating sample data to be read by Spark3

$ vi /tmp/employee.csv id,name,age 1,Ranga,33 2,Nishanth,4 3,Raja,60
  • Upload the employee.csv file to Ozone2

$ ozone2 --config /etc/ozone2/conf/ozone.om sh key put /testvol/testbuck/employee.csv /tmp/employee.csv
  • Provide necessary permissions under ozone policies, for spark user to access respective bucket and file, if ranger authorization is enabled.

  • Allow spark user to submit yarn applications.

  • Launch spark-shell

spark-shell --keytab /etc/security/keytabs/spark.headless.keytab --principal <spark-principal> --conf spark.yarn.access.hadoopFileSystems=<OFS_URI> --jars=/usr/odp/current/ozone-client/share/ozone/lib/ozone-filesystem-hadoop3-client-2.1.0.3.3.6.2-104.jar
  • Accessing csv file content in ozone as spark df

scala> val df=spark.read.option("header", "true").option("inferSchema","true").csv("ofs://omservice/testvol/testbuck/employee.csv")

Custom PySpark Job

To run spark job using ofs use following command:

spark-submit --conf spark.yarn.access.hadoopFileSystems=<OFS_URI> --jars=/usr/odp/current/ozone2-client/share/ozone/lib/ozone-filesystem-hadoop3-2.1.0.3.3.6.2-104.jar <SPARK_JOB> [parameteres-for-job-if-any]

For a secure cluster, add --keytab <keytab> --principal <principal> values to above command.

Here is a sample custom job that functions to access Ozone data with Apache Spark and write output to Ozone.

  • Custom Pyspark application using ofs to access data and write output

$ vi /tmp/PySparkSample.py from pyspark.sql import SparkSession from pyspark.sql.functions import col spark = SparkSession.builder \ .appName("PySpark Example") \ .getOrCreate() # Load data from input.txt input_file_path = "ofs://omservice/testvol/testbuck/input.txt" df = spark.read.text(input_file_path) df_transformed = df.select((col("value").cast("int") * 2).cast("string").alias("transformed_data")) #write the result data to output.txt output_file_path = "ofs://omservice/testvol/testbuck/output.txt" df_transformed.write.mode("overwrite").text(output_file_path) spark.stop()
  • Uploading sample input file to ofs

$ vi /tmp/input.txt 10 20 30 $ ozone2 --config /etc/ozone2/conf/ozone.om sh key put /testvol/testbuck/input.txt /tmp/input.txt
  • Provide necessary permissions to spark user to access respective bucket and key, in case of ranger authorization enabled.

  • Running PySpark app in secure cluster

spark-submit --keytab /etc/security/keytabs/spark.headless.keytab --principal <spark-principal> --conf spark.yarn.access.hadoopFileSystems=ofs://omservice/ --jars=/usr/odp/current/ozone2-client/share/ozone/lib/ozone-filesystem-hadoop3-2.1.0.3.3.6.2-104.jar /tmp/PySparkSample.py 10
  • Validate output in ofs

$ hdfs dfs -ls ofs://omservice/testvol/testbuck/output.txt/ Found 2 items -rw-rw-rw- 3 hdfs hdfs 0 2024-04-30 17:08 ofs://omservice/testvol/testbuck/output.txt/_SUCCESS -rw-rw-rw- 3 hdfs hdfs 9 2024-04-30 17:08 ofs://omservice/testvol/testbuck/output.txt/part-00000-e9cc165a-b8cd-4a2b-9722-f9802053ea77-c000.txt $ hdfs dfs -ls ofs://omservice/testvol/testbuck/output.txt/part-00000-e9cc165a-b8cd-4a2b-9722-f9802053ea77-c000.txt 20 40 60


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